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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.017G125900.1 |
Common Name | POPTR_0005s14460g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MYB |
Protein Properties |
Length: 262aa MW: 29646.1 Da PI: 8.6142 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G125900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd ll ++v+++G g+W I+ + g++R++k+c+ rw++yl
Potri.017G125900.1 8 KGAWTEEEDILLRKCVEKYGEGRWCQIPLKAGLNRCRKSCRMRWLNYL 55
79********************************************97 PP
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2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 61 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
rg ++ E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
Potri.017G125900.1 61 RGQFSVGEVDLIIRLHKLLGNRqvkMWSLIAGRLP-GRTANDVKNYWNTN 109
788999999**************************.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MVSSFVRKGA WTEEEDILLR KCVEKYGEGR WCQIPLKAGL NRCRKSCRMR WLNYLKPNVK 60 RGQFSVGEVD LIIRLHKLLG NRQVKMWSLI AGRLPGRTAN DVKNYWNTNL RKKVVSSTRE 120 AQTEPEPKAI TKANIIKPRP HKFKSLCWLG GKGIPFFNGG FQYGYDLCKP CSTSALSPSD 180 IIEVESMWGE SLLDDKEINI SNNKRCLGSG SEADREPINS LFVEDNAPEG ILIADVFCCE 240 QGQHCWSDLS FDADLWNLVN T*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 2e-22 | 8 | 114 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-21 | 8 | 114 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-21 | 8 | 114 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-22 | 8 | 114 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-22 | 8 | 114 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-22 | 8 | 114 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |