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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G125700.1 | ||||||||
Common Name | POPTR_0005s14480g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30744.9 Da PI: 8.8392 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v+++G g+W+ ++++ g++R++k+c++rw++yl Potri.017G125700.1 9 KGAWTEEEDILLRKCVEKYGEGRWHQVPSKTGLNRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.4 | 1.7e-13 | 62 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rg ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ Potri.017G125700.1 62 RGQFSVDEVDLIIRLHKLLGNRqvqMWSLIAGRLP-GRTANDVKNYWNTN 110 899********************************.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.793 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.31E-27 | 6 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 7 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-16 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-17 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.69E-12 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 60 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.911 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-11 | 61 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 62 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-9 | 65 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVSLLGVRKG AWTEEEDILL RKCVEKYGEG RWHQVPSKTG LNRCRKSCRL RWLNYLKPNI 60 KRGQFSVDEV DLIIRLHKLL GNRQVQMWSL IAGRLPGRTA NDVKNYWNTN LRKKVVSSTE 120 DAQTKPEAKS ITKDNIIKPR PRNLKNLCWS RAGKGTPYIN VASQYGDDLC QPYSTTALPP 180 SETDEVERMW WESLLDDKEI NLTNNSSCLG SGSAVNQDPI KSLFVEDNAA GGIMIGDVFC 240 EQGQSSWAGI SFDANLRNQI VTEIYRQGPE GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-22 | 9 | 115 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-22 | 9 | 115 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G125700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444016.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 2e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | U5GI57 | 0.0 | U5GI57_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s14480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 8e-64 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G125700.1 |
Entrez Gene | 18099379 |
Publications ? help Back to Top | |||
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