PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G125600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 281aa    MW: 31912.2 Da    PI: 8.836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G125600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++v+++G g+W+ ++++ g++R++k+c+ rw++yl
  Potri.017G125600.1  9 KGAWTEEEDILLRKCVEKYGEGRWHEVPSRAGLNRCRKSCRMRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding38.33.1e-1262109146
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                         rg ++ +E +l+++++k+lG++    W++Ia ++  gRt++++k++w++
  Potri.017G125600.1  62 RGQFSVDEVDLIIRLHKLLGNRqvkMWSLIAGRLS-GRTANDVKNYWNS 109
                         899********************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.584460IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-22659IPR009057Homeodomain-like
SuperFamilySSF466891.09E-266107IPR009057Homeodomain-like
SMARTSM007174.6E-16858IPR001005SANT/Myb domain
PfamPF002499.0E-17956IPR001005SANT/Myb domain
CDDcd001679.63E-121156No hitNo description
Gene3DG3DSA:1.10.10.609.2E-1960115IPR009057Homeodomain-like
SMARTSM007171.4E-961113IPR001005SANT/Myb domain
PROSITE profilePS5129415.65761115IPR017930Myb domain
PfamPF002497.9E-1162109IPR001005SANT/Myb domain
CDDcd001672.77E-765110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVGSLGVRKG AWTEEEDILL RKCVEKYGEG RWHEVPSRAG LNRCRKSCRM RWLNYLKPNV  60
KRGQFSVDEV DLIIRLHKLL GNRQVKMWSL IAGRLSGRTA NDVKNYWNSN QRKKVISSTD  120
EVQSKPKAKS ITRDNIIKPQ PWKFRNLFWL RGKSTPLINV GSQYGDDLCK PCYSTVSPPS  180
DINEVESIWW ESSLDDKEIN QTINSSCLGS VSVSAAAAYL ESSESHFVKN NAPRGIKTGD  240
VFYEQGQNCW SDISLDADLW NLINTELDQQ QPEGLQSIML *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2191154105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G125600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444723.10.0transcription factor MYB113 isoform X1
SwissprotQ9FNV99e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K1X7360.0A0A2K1X736_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14470.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-56myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]