 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.017G107500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
CO-like |
| Protein Properties |
Length: 425aa MW: 46640.1 Da PI: 5.2051 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.017G107500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 17.2 | 1e-05 | 70 | 112 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
r+C+++ + +C+ ++ +lC+ C H H++v
Potri.017G107500.1 70 RVCDTCRAAACTVYCRADSAYLCAGCDARVHAAnrvasrHERV 112
79******99******************999556677778766 PP
|
| 2 | zf-B_box | 28.1 | 4.3e-09 | 112 | 157 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
r+C+ +e+ ++ l C+ + lC C +H+ H++vp+
Potri.017G107500.1 112 VRVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 157
689*****************************66899999**9997 PP
|
| 3 | CCT | 68.3 | 2.1e-23 | 355 | 398 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Potri.017G107500.1 355 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 398
9*****************************************87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
| GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
| GO:0005622 | Cellular Component | intracellular |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MPRVTSLILS SPLVFFLQVS LILATNAHSL SYIAKDSITE IGIGREREEV MLKEESGGSG 60
SGGVVNNWAR VCDTCRAAAC TVYCRADSAY LCAGCDARVH AANRVASRHE RVRVCEACER 120
APAALLCKAD AASLCTACDA DIHSANPLAR RHQRVPILPI SGYLYGTQVG PAAGETEDQF 180
MTQEGEETIG EEDEDEAASW LLLNPAKNSN NQNNNGFLFG GEVDEYLDIV EYNSCAENQY 240
SDQYNQQHYS VPPKSCGGDS VVPIQYGEGK DHQQQQQQQH HNFQLGLEYE PAKAAYSYDG 300
SVSQGVSMSS MDVGVVPESA MSEISISHQS APRGTIDLFS SPPIQMPSQL SPMEREARVL 360
RYREKKKARK FEKTIRYASR KAYAETRPRI KGRFAKRTDV DVEVDQMFSS TLMAETAYGI 420
VPSF*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor. Does not affect flowering time. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY515150 | 0.0 | AY515150.1 Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds. |
