PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G091900.1
Common NamePOPTR_0017s12750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 468aa    MW: 52036.5 Da    PI: 4.1042
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G091900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-07256304247
                         SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                         ++WT eE++ + ++v   +       W+  ++t++  Rt k+++s+++++
  Potri.017G091900.1 256 NKWTDEEEQAFHEVVLSNPVSlgknFWDHLSATFP-SRTKKELVSYYFNV 304
                         58*************8644444444**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-4252313IPR009057Homeodomain-like
SuperFamilySSF466892.34E-5254305IPR009057Homeodomain-like
PROSITE profilePS500906.342256305IPR017877Myb-like domain
CDDcd001672.51E-6257305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MIHKRAFSDD NLYEFACKHP RQMEHIDQLA PIFPLDSGHQ KHLVSGDDSF RKCQEVGRSA  60
SDLFSECSNG TSKGFETGDN GCFPHFLWIG NGILEADNLS FFPEYFDHGH QLRALLEPEE  120
ACSSLDYPFQ KQVSVGPEHQ AYVPEWDSQG SSTSLNQLDD SNLQVACAHS SSPGVIIDGG  180
YEENLMGTCI LPMPDLEASA NYCYEATNHD CACPDAGSIR CIKQHVSEAR LKLRENLGEE  240
IFEGLGFCDM GEVVANKWTD EEEQAFHEVV LSNPVSLGKN FWDHLSATFP SRTKKELVSY  300
YFNVFMLQKR AEQNRFDPLN IDSDDDEWQK IEGETVEEDE DSVVESLTGQ DSSAYCQEDH  360
AEKFNEYVED EDEAVASKDG VDNVVRGIAT DAEYEGDVDD FSGAHVGIYH GCVGDLGPKH  420
FNGIAGTNTD DCDVQDDSCT SYEHHRDSID CYGPLDMGTD GRHSSQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G091900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324102.20.0uncharacterized protein LOC7467885
TrEMBLB9IK580.0B9IK58_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2153810
Representative plantOGRP294745