PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G091000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 419aa    MW: 47330.9 Da    PI: 4.8359
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G091000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.42.3e-2379173290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                          Y++ Ak++GFs+ +++ ++sk++++i++r+f+Cskeg + e++ k      ++++rr r+ tr g +a ++v+++++gkw+++kle++Hn
  Potri.017G091000.1  79 LYSASAKQTGFSIHVNSYYQSKKDNSIISREFCCSKEGLHGEKRAKkmdsgeETRRRRARPITREGSQALMTVRRRDNGKWYIAKLEKNHN 169
                         69999*********************************99998888899999999999********************************* PP

                FAR1  87 Hela 90 
                         He+ 
  Potri.017G091000.1 170 HEIE 173
                         *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2079172IPR004330FAR1 DNA binding domain
PfamPF044343.9E-7265300IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.52265301IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-6276303IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDDDEPAIEA KDLVNSYVVA LEDEGDECCV VEDAETPMVL DDGNRFDTVN VELFQCLNGR  60
VEEPALGMGF TSEDDVRDLY SASAKQTGFS IHVNSYYQSK KDNSIISREF CCSKEGLHGE  120
KRAKKMDSGE ETRRRRARPI TREGSQALMT VRRRDNGKWY IAKLEKNHNH EIEKSVSVNS  180
LFDGYVNART TLQDFAEQYV RALDDRYEKE AKAELETVYT KPILKTPLPM EKQAAEVYAR  240
KLFCGDDGGT TTYELAKFDE EQKVYFVTLS ISEEIASCSC KMFQFEGILC RDVIAVFKAT  300
NVFILPQNYI LQQWTKNARD DAILDVLSCL DVPSNSHRAR IKISGSKKNA MSAQKLETVA  360
GNSFQDENMI SSHRDSYSLQ TSHAGQHKAN TAESWMYNNT FEYVWSNSTS DIEGKCGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G091000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905347.11e-86protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K1X5I40.0A0A2K1X5I4_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1968044
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-47FAR1-related sequence 5