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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.017G087800.1 |
Common Name | POPTR_0017s12370g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 401aa MW: 44440.9 Da PI: 4.3474 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G087800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60 | 5.5e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g
Potri.017G087800.1 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
789******.7*********33....35**********************99998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MARKRKVSES VEDKNSSEGT MAWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPTSST TPALPSKITN 120 LLLQRLKARN NSCDPSKTSQ PHNLQQKLVE EYREPATDFS DTQFTDFLDH PDDYPVCNDD 180 TINTNASAFD CTTKSLGPCL TEKEDSGGKE WDFDYSWSDV AQSSSGDGNN LGGEAEEDGE 240 EEEEGNDIGA LDFHFFDDVG SPFYYSPFEI AEDIEEPVEP ECYGDEPSML KAAMKRMKYE 300 RKFSASLYAF NGIPECLKLK LGSGNAKGKG RSDQLTELRN ACNGRKEGNR AEEESLEVMQ 360 KQDDYLQSST EMGSSSSSLI NDGELSLWNT LDLPPICFIN *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF155958 | 0.0 | EF155958.1 Populus trichocarpa WIN1-like protein (WIN1L) gene, complete cds. |