PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.017G084600.1 | ||||||||
Common Name | POPTR_0017s12080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 507aa MW: 55263.6 Da PI: 5.3644 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.1 | 1.1e-39 | 148 | 208 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Potri.017G084600.1 148 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 145 | 205 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.7E-32 | 150 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.817 | 152 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 154 | 190 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MSEPKDQAFK LFGKTIQVPE ISVTTATTTD DDDDDDSQDQ DRPSCANSSL DETNITDDYN 60 NNDKRDHGEE DTETDDKDSV GKTTIENQED GASPVAAKES SNLDATSGTS ENPKTPSVEK 120 ESTALKTSNT EEEQSDTSNS QEKTLKKPDK IIPCPRCNSM DTKFCYYNNY NVNQPRHFCK 180 NCQRYWTAGG TMRNVPVGAG RRKNKNSASH YRHITIPEAL QNGRADVPNG VHHPSLKTNG 240 TVLTFGSDAP LHESMASVLN LADKTMRNCT MNGFHKPEAL RVPVSYGGGE NGDDHSNGSS 300 VTVSNSSDEA GKSVSKESAM QNYQGYPPQI PCFPGVPWPY PWNSAQWSSP VPPPAFCPSS 360 FPMPFYPAAA YWGCTVPGAW NVPWLPQPSS PKQTSSSSDP NSPTLGKHSR DENLLKPSNS 420 KEELVNTERC LWIPKTLRID DPGEAAKSSI WTTLGIKNDK PGSFGGRGLF KAFDSKVEKN 480 RAAETSPVLH ANPAALSRSL KFQESS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8274 | 0.0 | bud |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.017G084600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323863.1 | 0.0 | cyclic dof factor 2 | ||||
TrEMBL | B9IJZ2 | 0.0 | B9IJZ2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s12080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 1e-103 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.017G084600.1 |
Entrez Gene | 7495982 |