![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G082500.1 | ||||||||
Common Name | POPTR_0017s11880g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 35732 Da PI: 7.3716 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Potri.017G082500.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTSTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.9e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Potri.017G082500.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.882 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.00E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.674 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTSTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNFWNT HLKKKLRKLQ 120 AGQEGQSRDG LSSTGSQQIS RGQWERRLQT DINMARQALC EALSPGKPSS LLTGLKPSCG 180 YEKPATEPIY ASSTENISRL LKGWMISGPK QSLKNSTTQN SFIDTAGADS LSSEGTPDKA 240 DKNGTGLSQA FESLFGFDSF DSSNSDFSQS MSPDTGLFQD ESKPNSSAQV PLSLIERWLF 300 DEGAMQGKDY INEVTIDEDN LF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.10610 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G082500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC216459 | 1e-138 | AC216459.1 Populus trichocarpa clone POP074-L11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323853.1 | 0.0 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-116 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | B9IJX2 | 0.0 | B9IJX2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s11880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-110 | myb domain protein 94 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G082500.1 |
Entrez Gene | 7495972 |
Publications ? help Back to Top | |||
---|---|---|---|
|