PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G053700.1
Common NamePOPTR_0017s08090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 314aa    MW: 33631.6 Da    PI: 10.3644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G053700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-20154203356
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++ a+++l+g+
  Potri.017G053700.1 154 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDSAARRLRGA 203
                         9*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-21153210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-29153210IPR001471AP2/ERF domain
PROSITE profilePS5103222.642153210IPR001471AP2/ERF domain
SMARTSM003802.8E-31153216IPR001471AP2/ERF domain
PRINTSPR003671.4E-10154165IPR001471AP2/ERF domain
PfamPF008471.1E-13154202IPR001471AP2/ERF domain
CDDcd000181.23E-31154211No hitNo description
PRINTSPR003671.4E-10176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTCYASSNQL NPTMNHQKLL PVPFFPQPET YQMFRLLTEN PSFRGSFLEP QNSFSSPFTF  60
NHYNPTSYPP VSPDISASVS LTDSFKKSPD TPPVLDGIGA IVGQQVLFGT NDTKNSEVSG  120
LSSISQRTGS KTSKQESGAV RSSVSDGVPI RKTYRGVRKR PWGRWSAEIR DRIGRCRHWL  180
GTFDTAEEAA RAYDSAARRL RGAKARTNFE IPPVLPPVSS SSSSPPSACS GSISNNAEAR  240
KRTNVNNHSS KMVGNGGRKC AVVTSVAHLF SDFEGKGTSA GGNVELDLKL GMGSDGHRGG  300
NKSAASAPPS MLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-17152211161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-161542091571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G053700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323768.30.0ethylene-responsive transcription factor ERF084
TrEMBLA0A2K1X3K40.0A0A2K1X3K4_POPTR; Uncharacterized protein
STRINGPOPTR_0017s08090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-23ERF family protein