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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.017G047300.1 |
Common Name | POPTR_0017s07460g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
M-type_MADS |
Protein Properties |
Length: 245aa MW: 27379.3 Da PI: 10.5402 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G047300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 69 | 4.5e-22 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
i n+sn vtfskRr g++KKA+EL++LC+aev++i+fs+ k++ +
Potri.017G047300.1 16 IPNESNLMVTFSKRRSGLFKKASELCTLCGAEVSIIVFSPGKKVFSF 62
889*************************************9999887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MVRKSKGRQK LEMVKIPNES NLMVTFSKRR SGLFKKASEL CTLCGAEVSI IVFSPGKKVF 60 SFGHPSVEKV MERYLSGNIP QTSGAFHLIE AHRNARVHEL NMQLTQVANQ LEVEKKRGEE 120 LDRMRKASQS RNWWEKPLQE LDLAQLQQLR AALQDLKQDV TRHAKQILIQ NSAPQPFIAA 180 NPSTSGNHLF DTRNTGFISN MTVPPFNTNM SGTPFNTNMT ASPFNASSAM PPFGYSLGYG 240 TSFF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 9e-16 | 7 | 83 | 1 | 77 | Myocyte-specific enhancer factor 2A |
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