 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.017G042200.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GATA |
| Protein Properties |
Length: 407aa MW: 46027.5 Da PI: 5.1752 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.017G042200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 47.1 | 3.2e-15 | 251 | 287 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+
Potri.017G042200.1 251 CQHCGISAkdTPAMRRGPAGPRTLCNACGLMWANKGT 287
*****88778************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 407 aa
Download sequence Send
to blast |
KTIKIKVYYF IARNFTYRER EGGWEGGGAL FLVGMIKKME LVNHQRQKKG RKGRDHHNRG 60
VMQIEGVDYD YGYGFDDGMM EMINGGVVEE VRQINTNSNY SGVVIGNRND RVVETTRTSE 120
LTIAFEGEVY VFPAVTPSKV QAVLFLLGEP ETSTIAPNSD FFLQQNARSA GDASQGLKFS 180
RRIASLERFR EKRKERCFEK KVRYTCRKEV AQRMHRKKGQ FASSNDCYST DTGNWEPSNS 240
MPNPESLLLR CQHCGISAKD TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRHISF 300
NQNEPVTPDF KPLNMELENP FANPEEEESQ EESKPVPLES ENSIRPNEQD MLETDKNVPD 360
PLPMHVENSS VNLDDEDFEN TLDELGDVSG SEFEIPEHFD DQVVVF*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216601 | 0.0 | AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence. |
