PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G041000.1
Common NamePOPTR_0017s06860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 316aa    MW: 34513.4 Da    PI: 4.771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G041000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.42e-062212571555
                         HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ri ++   Lr+++P+       +K++ a++Le+A++YI +Lq
  Potri.017G041000.1 221 RIAERVKCLRKVMPWiT-----TKMDTATVLEEACRYIMNLQ 257
                         67777788*******55.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.909206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-4215262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-9219267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-5220261No hitNo description
Gene3DG3DSA:4.10.280.106.5E-8221265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEIEDFDSDF VFNGDPAIQL FPLISGHDHA DRATTFNSSV FSDVGTPATA TPMFNSVFSD  60
AGMLAPSLLS YYYSSNDLLT SMPPPSTTTS NFTNLLHEDG DNYYYYTPPA SEQLGLGNSF  120
VLAPELSPAH ESAQPYDFFS SIPSQPAEST QPHDLFSSVP NESATRSVLN DSQTLESVLG  180
KFNAVTKKPK RSGQMKKPKR SAFDYGTGSS SSSASVLAKQ RIAERVKCLR KVMPWITTKM  240
DTATVLEEAC RYIMNLQEQI RALVQPRPAT SFDHYNNFVH GANDGGGGYG EGVVSREQIM  300
EMVLKANVDQ NFVGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G041000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024444737.10.0uncharacterized protein LOC18107016
TrEMBLA0A2K1X3040.0A0A2K1X304_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2822433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-07bHLH family protein