PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.017G029400.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 287aa MW: 32877.5 Da PI: 7.5239

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.017G029400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.6e-26	121	209	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ Potri.017G029400.1 121 FYDEYARRIGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 209 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-24	121	209	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MSFMIKTTCC QIYSCLSGGI KTLEFHDHLS LDSDPSYPYS PKPKNTSLNS RNYLTYPSQF 60 RVSLIFAASM DVDERIDIAE SSIGNELVEH GGELVEHEGD DMVVEPHEGM EFESEDAAKI 120 FYDEYARRIG FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNV RKPRPSTREG 180 CKAMIHVKFD KSGKWVITKF VKDHNHPLVV APREARQTLD EKDKKIQELT AELRNKKRLC 240 ATYQEQLSAF VKIVEDHSEK LSKKVKNAVE NLKEFESIEQ ELMQHT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.017G029400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444552.1	1e-159	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024448822.1	1e-159	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3N7G3V3	1e-158	A0A3N7G3V3_POPTR; Uncharacterized protein
STRING	POPTR_0017s05820.1	1e-134	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-112	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.017G029400.1