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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.017G017100.1 |
Common Name | POPTR_0017s04840g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C2H2 |
Protein Properties |
Length: 472aa MW: 51791.4 Da PI: 9.7039 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G017100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 64 | 84 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Potri.017G017100.1 64 CEICGKGFQRDQNLQLHRRGH 84
*******************88 PP
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2 | zf-C2H2 | 13.5 | 0.00022 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Potri.017G017100.1 138 WKCEKCSKRYAVQSDWKAHSKTC 160
58*****************9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MLEKIMATEE AITSSNNGFV ENPVGGSNPP ALKKKRNLPG TPDPEAEVIA LSPKTLMATN 60 RFLCEICGKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVKK RVYVCPEKTC VHHHPSRALG 120 DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EETARVNAVS SINNLTAGSI NYHLMGNPLG PNMAQHFSSI FKPISSNDHQ 240 TRQGGVSLWM NQGVPQVSEA LMGNNIQEIH QLRSANSSGA MFGDLLAVSC SHAPPSDHYQ 300 FNWPVFGNKI SSNNAHEELT STLVLPLTNV KEAAAASQLA SVPSLYSTQQ QQSHQTTSAN 360 MSATALLQKA AQIGATSTDP SFLGSFALKS NAKKVQDGNK FCGLYGSSPV STNPASDVEN 420 SGSDQISSLN QLQMYPKRQK IFQSDQDSPA GGQTRDFLVM GNFAGRKRWH S*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |