![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G013700.1 | ||||||||
Common Name | POPTR_0017s04540g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23153.7 Da PI: 9.0393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7.1e-21 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka+++a+++++g+ Potri.017G013700.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDKAAREYRGA 77 69*******.**********8...557**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-29 | 27 | 84 | No hit | No description |
Pfam | PF00847 | 3.5E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 27 | 86 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPKKLNASN SGCFKKASGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAAKAYDKA AREYRGAKAK TNFPFSGEVV NYDDDKQSSS HSSTVESSSS PVVSAAVTRQ 120 VGGGGVGGVV GMGGFPFVYQ QQQQNVNVVA PVWFFDSVRP EFVTQRFPVR FDQVGLESAG 180 GAQSDSDSSS MVDCQPRRSV LDLDLNLPPP LDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 27 | 85 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-22 | 27 | 88 | 5 | 70 | ATERF1 |
3gcc_A | 3e-22 | 27 | 88 | 5 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.15463 | 0.0 | stem |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G013700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372733.1 | 1e-156 | ethylene-responsive transcription factor 9 | ||||
TrEMBL | U5FHV1 | 1e-155 | U5FHV1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s04540.1 | 1e-156 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-28 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G013700.1 |
Entrez Gene | 18106786 |