![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.017G013400.1 | ||||||||
Common Name | POPTR_0017s04510g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 383aa MW: 43013.4 Da PI: 8.0425 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 124 | 144 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f r G C++G++C F+Hg Potri.017G013400.1 124 VCPEFKR-GGCSRGENCEFSHG 144 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.0E-5 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 120 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 124 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 151 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6 | 154 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.484 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 383 aa Download sequence Send to blast |
MSTICAEQHK PYTPHQLLSP KRPFRDLEIL PGKLLTKKTH QETLDMSPYE TNLQRFLPYN 60 DYSNEKVLDG ELDPYSSDHF RMYEFKVRRC TRSRSHDWTD CPFAHPGEKA RRRDPRRFHY 120 SGTVCPEFKR GGCSRGENCE FSHGVFECWL HPSRYRTEAC KDGKNCKRKV CFFAHSPRQL 180 RILPEVSSRN KSLASPCSSL NHSHCCVVCH SMTSSPTSTL LGMSHMSPPL SPSLSPPLSP 240 VKHQSLSGFS PISRYNETLS KFRAGVVSYK DVLSELMSSL EAMNFNEGAS VSSPMSLSTN 300 HNRNVNSTTP WNIDVSFSGE DQPQFILSPS TPTPSSKFFN GDCSSNKGLF VDDKINDHNN 360 IGDGGLACTS DPDLGWVNEL LM* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.8688 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.017G013400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006372730.1 | 0.0 | zinc finger CCCH domain-containing protein 2 | ||||
TrEMBL | U5FMC6 | 0.0 | U5FMC6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s04510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03790.1 | 6e-87 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.017G013400.1 |
Entrez Gene | 18106783 |