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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.016G126100.1 |
Common Name | POPTR_0016s13380g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 474aa MW: 53118.1 Da PI: 5.1358 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.016G126100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.3 | 9.2e-19 | 74 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr++ +g+WvAeIr+p++ g kr r +lg+f ta eAa+a++ a+++++g
Potri.016G126100.1 74 CRYRGVRQRT-WGKWVAEIREPVKKGsvtnKRrIRLWLGTFSTAIEAARAYDYAARAMYG 132
78*****999.**********777444666445************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 474 aa
Download sequence Send
to blast |
MSIDMEDSLR QSSALGFSSK NKKKWQRRRN GCESVEDTLA KWKKNNKLQI TKVPGKGSKK 60 GCMKGKGGPE NKSCRYRGVR QRTWGKWVAE IREPVKKGSV TNKRRIRLWL GTFSTAIEAA 120 RAYDYAARAM YGPNAILNFP DYSHESGDQL GSLSSSMTAT ESKTTLDNYE DNKVERLKMG 180 YCGSREVNKQ SGSSGIYAVN ESEEEVEKFQ VAESSGRELK AEVWDLTNEL MSSHHVEAEA 240 PVLRGEMDGD LAEIVESWGC HGIDDRYDFL QNETENVEYK LKNEIAESRL SNRLHECLSS 300 DHDMRTDRKS FYDAQMPLTT GEEFSGLTVG NSNHFEARHD EIDLGLCNPE IDIKPFIQGI 360 PDSSALKGER NYGYVHGEVH AASQLQSGRP PELSWQLQSG RPPELSWQLQ SPGTNLPGSL 420 SYIQEADLGG GCNFDLSKQD INWGLVGEPE LLINWGLVGE PELLDPWFPE LQF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC210550 | 0.0 | AC210550.1 Populus trichocarpa clone POP049-H01, complete sequence. |