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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G119000.1 | ||||||||
Common Name | POPTR_0016s12650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 19993.5 Da PI: 9.1701 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.2 | 5e-24 | 28 | 74 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k++e +snr+vtfskR+ng++KKA ELS+LC+ae+avi+fs++ kl+ Potri.016G119000.1 28 KKVEKESNRYVTFSKRKNGLFKKATELSTLCGAEIAVIVFSEHRKLF 74 57899*************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.805 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-31 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.62E-36 | 21 | 89 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-28 | 21 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-21 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-24 | 29 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-21 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-21 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDATDSNQQL QQQETRRTSK GRQKIEIKKV EKESNRYVTF SKRKNGLFKK ATELSTLCGA 60 EIAVIVFSEH RKLFSCGQPD VDKVLDRYLA ETERVPNSFP AVTNNSIESQ LANKQQYARS 120 LKRLEDEQTV AKMIGNMNDM NEGGFWWDLL GNFQNSNTHN LRGSATCLLH GATGLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 4e-19 | 21 | 90 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-19 | 21 | 90 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-19 | 21 | 90 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-19 | 21 | 90 | 1 | 70 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G119000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 2e-39 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. | |||
GenBank | AC213420 | 2e-39 | AC213420.1 Populus trichocarpa clone POP033-D24, complete sequence. | |||
GenBank | AC214632 | 2e-39 | AC214632.1 Populus trichocarpa clone POP076-H19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323594.2 | 1e-98 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443414.1 | 1e-98 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443416.1 | 1e-98 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | U5FPB2 | 1e-130 | U5FPB2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s12650.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G119000.1 |
Entrez Gene | 18106316 |