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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.016G117300.1 |
Common Name | POPTR_0016s12470g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
Trihelix |
Protein Properties |
Length: 280aa MW: 33431.1 Da PI: 9.6921 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.016G117300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 77.7 | 1.7e-24 | 39 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ qe+++ + +r e++ ++ ++k++k lWe +s+km+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l+
Potri.016G117300.1 39 QWSIQETKEFLMIRAELDPTFMEKKRNKVLWEVISNKMKEKGYNRSAEQCKCKWKNLFTRYKGCETIEPEA---MRQQFPFYNELQ 121
7********************************************************************95...56689*****98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MEGHLHHQHH NQHHLQQYQL LQQQHHISVN VEASDKFPQW SIQETKEFLM IRAELDPTFM 60 EKKRNKVLWE VISNKMKEKG YNRSAEQCKC KWKNLFTRYK GCETIEPEAM RQQFPFYNEL 120 QAIFTSRMQR MLRAEAEGAA TGLKKKAVKL SSDDEDKNEE IIEGEKGGSR KKIKKGKAIG 180 GTSSSGNSIS LKESLEDFTK QQIQMEMQWR EVFEARENER MMKEMEWRQT MKQLENDRIV 240 MERRWREREE QRRVREEARA EKRDALITAL LNKLRREDM*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |