PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G101400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 322aa MW: 36836.2 Da PI: 7.8762 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Potri.016G101400.1 55 YSCSFCRREFRSAQALGGHMNVH 77 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.63E-6 | 52 | 81 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEQARYWMLT KRKHSLDSHF QASTNPSLDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC 60 RREFRSAQAL GGHMNVHRRD RARLKQSPSP HNEILHHEHQ KPLNHLQNPY TSFGFQYPSQ 120 LCTLDYCPNP NSNPGFIPSR TSSSRVSITS TQENFCDKTI SPPFTSFIVE EQQKRSHKSS 180 PPPQTKLTKE RCHISSLSTE GEQNSRKIES GCRAKVDYVQ TDLSVSLNLV VRRTRPSISD 240 CGEEPMSCKK RRIDKSSLPF FLKCNSVDKH HVQSEVFEIS PCTVDELDLE LRLGDRPKKY 300 LGKSIEPPFD FKDISEETER SE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 50 | 77 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 50 | 77 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G101400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323520.1 | 0.0 | zinc finger protein 10 | ||||
TrEMBL | A0A2K1XDM5 | 0.0 | A0A2K1XDM5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s10460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-28 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G101400.1 |