PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G094800.1
Common NamePOPTR_0016s11350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 201aa    MW: 21554.2 Da    PI: 9.7685
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G094800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.54.2e-3350121574
                 TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                         +++++++hTkv gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl+ a+++i++ tgt+++++     +
  Potri.016G094800.1  50 TSQSKDRHTKVHGRGRRVRMPALTAARIFQLTRELGHRSDGETIEWLLRHAEASIIASTGTGTIPSIPIstT 121
                         5689*********************************************************88888443211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-2852129IPR005333Transcription factor, TCP
PROSITE profilePS5136925.56153107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MASETVLYNF SSTSNSQHQQ PSPNNNNSVV PSPTTGGSQS KLTHPRKSTT SQSKDRHTKV  60
HGRGRRVRMP ALTAARIFQL TRELGHRSDG ETIEWLLRHA EASIIASTGT GTIPSIPIST  120
TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA  180
TVAVDAEEGR QQELTGEHKM *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G094800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2092280.0AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373942.11e-146transcription factor PCF1
SwissprotO238752e-34PCF1_ORYSJ; Transcription factor PCF1
TrEMBLB9N7J51e-144B9N7J5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s11350.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-29TCP family protein