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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G093200.1 | ||||||||
Common Name | POPTR_0016s09640g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 356aa MW: 38755.2 Da PI: 6.7485 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.6 | 1.9e-27 | 101 | 183 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg Potri.016G093200.1 101 SGRGLRQFSMK---VCEKVESkGTTTYNEVADELVAEfadpsnsvstpdqqqyDEKNIRRRVYDALNVLMALDIISK-DKKEIQWKG 183 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.4E-135 | 1 | 355 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 1.1E-45 | 97 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.8E-35 | 100 | 183 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-25 | 102 | 183 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-21 | 103 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 3.98E-43 | 188 | 291 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 4.97E-43 | 190 | 306 | No hit | No description |
SMART | SM01138 | 2.6E-78 | 190 | 353 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.1E-41 | 191 | 304 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MVTGGGHLED GDRHPSSAAT RGGGGGATTG SWVSGQSVST SGSVGSPSSR SEHAMATPAS 60 DNTFLRLNHL DIHADDAATQ DAAANKKKKR GQRAAGGADK SGRGLRQFSM KVCEKVESKG 120 TTTYNEVADE LVAEFADPSN SVSTPDQQQY DEKNIRRRVY DALNVLMALD IISKDKKEIQ 180 WKGLPRTSLS DIEELKAERL GLRNRIEKKA AYLQELEEQF MGLQNLIQRN EQLYSSGNAP 240 SGGVSLPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERHQSD 300 NMAAPNPAAD GGEGSSMSIM YQPQIRTSPR TNNPVRLPTS PPLPGIIKAR VKHEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-38 | 99 | 188 | 6 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G093200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF181998 | 0.0 | AF181998.1 Populus tremula x Populus tremuloides transcription factor DP1 (DP1) mRNA, complete cds. | |||
GenBank | AY307373 | 0.0 | AY307373.1 Populus tremula x Populus tremuloides DP1 (DP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322893.1 | 0.0 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-157 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | B9IFR2 | 0.0 | B9IFR2_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_010769m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-129 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G093200.1 |
Entrez Gene | 7466948 |