PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G091700.3 | ||||||||
Common Name | POPTR_0016s09290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 754aa MW: 83744.1 Da PI: 7.4595 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 49 | 91 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + Potri.016G091700.3 49 AWTRQEEESFFTALRQVGKN-FEKITHHVQ-SKNKDQVRHYYYRL 91 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-11 | 32 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 44 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.564 | 45 | 96 | IPR017884 | SANT domain |
SMART | SM00717 | 9.0E-7 | 46 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-6 | 49 | 92 | No hit | No description |
Pfam | PF00249 | 2.1E-6 | 49 | 91 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MEAQVSLDSE RQLLQNGSIQ DGDSGVTSST PDCVETRQPE KRPTRQWAAW TRQEEESFFT 60 ALRQVGKNFE KITHHVQSKN KDQVRHYYYR LVRRMNKLLG PGLCLDAKNS KDTNAAMLRW 120 WSLLEKYSCK ASKLHLKPRR FKIFIEALEN QLLKDQRKNV RKRSSQGENG SPTTPSIITN 180 QNRASVHDTR TVKLVIVDSQ NIQKLGGKGS LKRNVNMGVV RNNNKGDSTA MKPARQRRKP 240 AAYKKWEKAA IAGVSLVADA AEHLERTATD KEDEHDQGMV GKKGLDPVEK LLPHFHPSLR 300 CVESNALTNM KLKLQLFPID DGTRRALEMD KHNPHLELTL STRKKISSVL EHLNRKWGDS 360 TVASGELMLF PYSVNRENLV SYQRWTQDSL VSAADVYFSI GSPPVFRLRY GWFFNVNFAS 420 VTLQAPSTYS CLPVGGNEKD KTMDSVPTAE PSTSDQFEKP ENPCRDCPTS ENNNHASILH 480 SAGVTNENNE FVATGPRNNL VKLSNVNPLS AGEWADSLTN VSIGDLLSEL PHVANHNCIE 540 SLIVQSNQCL QEIPFSCDSF DAAIAAHISR HQGKMGFHSA VASYTSSIWD GEETCDAFAF 600 QKNHSLRKEV TTSSAVASPR KGGLIKGNVF TLVLQELPVI EGPNDYPTGG EPMDECSSDS 660 QVVSNQVKDF NGLTDIYWPD SLGLLDLDIP SSKYHTEDLI LSDSLGGLNH LIASSLDAFQ 720 NCSFFGLNKK DSISTVEARE TTSFSDFKIS GGV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G091700.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443873.1 | 0.0 | TSL-kinase interacting protein 1 isoform X2 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2K1XD36 | 0.0 | A0A2K1XD36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s09290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G091700.3 |
Entrez Gene | 7467629 |