PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G090300.1
Common NamePOPTR_0016s09150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 701aa    MW: 78045 Da    PI: 8.3301
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G090300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.8e-23124225199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae +         ++ +  tl  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF  
  Potri.016G090300.1 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldytADPPVQ--TLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHKKLVAGDSVVFL- 211
                         89*********************999****997555555..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+v+r+
  Potri.016G090300.1 212 -RAENGDLCVGVRRA 225
                         .4488889****996 PP
2Auxin_resp101.79.7e-34294376283
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a  a+++ +Fe vY+Pra t+eF vk++ v++ ++++++ GmRfkmafetedss++++ +Gtv +v+d+dp+ Wp+S+Wr+L+
  Potri.016G090300.1 294 AVLAANGLPFETVYYPRANTPEFFVKASLVKTVMQIRWCSGMRFKMAFETEDSSRISWfMGTVCSVQDADPLCWPGSPWRLLQ 376
                         667899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-37114230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-30118242IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-21123224No hitNo description
PROSITE profilePS5086312.802124226IPR003340B3 DNA binding domain
SMARTSM010195.2E-21124226IPR003340B3 DNA binding domain
PfamPF023629.7E-21124225IPR003340B3 DNA binding domain
PfamPF065071.1E-28293376IPR010525Auxin response factor
PROSITE profilePS5174515.06619697IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFMEAKEI LKEEADKCLD SQLWHACAGG MVQMPAVNSK VFYFPQGHAE HACEPVDFRN  60
LPGASHTLCR VSAIKFMADP ETDEVFAKIR LVPINSNEID LDDQEVAVNG EKEAAHDNKK  120
PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY  180
RGTPRRHLLT TGWSPFVNHK KLVAGDSVVF LRAENGDLCV GVRRAKRAIS GGPESLWNPA  240
LGNLVVPYGG FGAFSREDEH KMVKNGRGNG NGSKSNESLM GRGKVRAESV IQAAVLAANG  300
LPFETVYYPR ANTPEFFVKA SLVKTVMQIR WCSGMRFKMA FETEDSSRIS WFMGTVCSVQ  360
DADPLCWPGS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS HMSAIHLSPF SSPRKKLRLP  420
QHPDFPIDGQ FPMPIFSGNL LQPSSPFGFL PNNIPAGMQG ARHAHYGLPL SDLNLNKLHT  480
GLLRAGFPPL LDHTASLTKA SNIQTIQKPI LSEGVSCELT MSHSTQTSKR ADDVKIPQLV  540
LFGQRIVAEQ YISRSCSDNT GSPVLARNSC FEGKLDKMAK FSEGSVSTLP HRGLSKHSSC  600
EGLQWNKNNH RKSEQSLEIG HCKVFLESED VGRTLDLQLL ESYEELYRKL ADMFGLRNSE  660
KFSNLLYRDD NGITKHIGEE PFSNFSKTAR RLTIVTRFRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-82339732388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G090300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5854790.0KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007683.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9IFN40.0B9IFN4_POPTR; Auxin response factor
STRINGPOPTR_0016s09150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]