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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.016G088500.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
C2H2 |
| Protein Properties |
Length: 509aa MW: 55541.4 Da PI: 9.5681 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.016G088500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.1 | 3.1e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
Potri.016G088500.1 63 FICEICNKGFQRDQNLQLHRRGH 85
89*******************88 PP
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| 2 | zf-C2H2 | 12.7 | 0.00038 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Potri.016G088500.1 139 WKCEKCSKKYAVQSDWKAHSKTC 161
58*****************9998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MMSGDAFSLP SLIAGFAQDQ NNANPKPNPN PVAKRKRNLP GTPDPDAEVI ALSPKTLMAT 60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVR KKVYICPEKT CVHHDSSRAL 120
GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF 180
ITHRAFCDAL ADESARITSV QDTDLNFRND TVNLPHGFSN RPGVPDIAGI SQFSAGFRPD 240
FSGMSSPGNS LGADQQKTGL SLWINQANSH ITPNSNLYVP PISTGLPEMV QMVANLYSSS 300
SSANIHGNLT LSGLSHELKE EGINKANMGD TSASLYSDRI QNKQLKLAAV PMSATALLQK 360
AAQMGSTRSN QPFFGNSYGL MSSSSSSSPT TNPISLNQNP NELYHVFQNV KQPASESLTA 420
TYNSVAMSDA VMGTSSNLDQ LVMQTSGNLQ NDPTQLKLQR GSNSTESGLT RDFLGMSSES 480
GRLFLPHDLA KFASISSAMS SNHFTANH*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 89 | 101 | KLKQRTNKEVRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Start to accumulate during the 16- to 32-cell stage of embryogenesis. {ECO:0000269|PubMed:17785527}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the quiescent center, the ground tissue stem cells and to a lesser extent in mature cortex and endodermis cells. {ECO:0000269|PubMed:17785527}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
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