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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G083900.1 | ||||||||
Common Name | POPTR_0016s08470g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 303aa MW: 33123.7 Da PI: 9.5632 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.6 | 3.2e-14 | 38 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Potri.016G083900.1 38 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-17 | 32 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 33 | 87 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-7 | 36 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-19 | 36 | 85 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-11 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-12 | 38 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.37E-9 | 40 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MATQPPLAAA AATGTTSATS SDGSGKKVRK PYTITKSRES WTEEEHDKFL EALQLFDRDW 60 KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG TIAHVPPPRP KRKASHPYPQ KASKIVLLPL 120 PVSMAYPSSM NTFTPGYAPW DETSMLITSA TRKIMPSQDE LANFHGAEAD IGTKDVSDIG 180 TKGVSRFSYN TVSGLGTSSR TLPSAEMPKQ GKQAPVLHGI PDFAEVYSFI GSVFDVETKG 240 HVKKLNEMDP INFETVLLLM RNLTVNLSSP DFEPIRKVMS SYDVNSKTVG VAALNQTNDI 300 AC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1959 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G083900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148355 | 0.0 | EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373855.1 | 0.0 | protein REVEILLE 8 isoform X1 | ||||
Refseq | XP_024442937.1 | 0.0 | protein REVEILLE 8 isoform X1 | ||||
Swissprot | Q8RWU3 | 1e-133 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A2K1XCP4 | 0.0 | A0A2K1XCP4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s08470.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6735 | 34 | 49 | Representative plant | OGRP928 | 15 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-133 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G083900.1 |
Entrez Gene | 7467599 |
Publications ? help Back to Top | |||
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