PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G069700.1
Common NamePOPTR_0016s07040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 680aa    MW: 73938.3 Da    PI: 7.1673
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G069700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-093784151954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Potri.016G069700.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415
                         554458******************************88 PP
2BELL126.11.4e-40242313172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi
  Potri.016G069700.1 242 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 313
                         79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-68166311IPR006563POX domain
PfamPF075266.9E-51171310IPR006563POX domain
PROSITE profilePS5007112.147356419IPR001356Homeobox domain
SMARTSM003891.4E-8359423IPR001356Homeobox domain
CDDcd000862.05E-11359420No hitNo description
SuperFamilySSF466891.28E-16360426IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28362425IPR009057Homeodomain-like
PfamPF059202.8E-18376415IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MATYFHGNPD FQAAAASAEG LQTLVLMNPT YVQYSNTPPP PPSNNFVFLN AAASAAASNS  60
LSPQPHLSGH APPNTQQFVG IPLDPNSHDA STLHGLIPRI HYNLYNPIDP PPTARDTPRA  120
QQGLSLSLSS QKQGCFGSQA QTVSGEDIRV SGGSVSSGSG VTNGVLGMQG VLLSSKYLKA  180
AQELLDEVVS VNNNDIKSEL SKRSNGIGSN TSNKVVGESL AGEGSGGGEV SGKRGPELST  240
AERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK  300
QFRCLKDAIT GQIKAANKSL GEEDCLGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR  360
PQRGLPERSV SLLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYTEEIK EQEQDGSEDK TSKSDHNEDS ASRSVLQEKG SASENQTRNF KSLDNSPDAP  480
SEISMPTAST SPVGGNVRNQ SGFSFIGSSE LEGITQRSPK KRRSNDFIQS STSVPSINMD  540
IKPGEANDEQ VSVKFGSERQ SRDGYSFMGG QTNFIGGFGQ YPIGEIGRFD GEQFTPRFSG  600
NGVSLSLGLP HCENLSLSGT HQTFLPNQNI QLGRRVEIGE PNEFGAINTS TPHSSTAYES  660
IDIQNRKRFL AQLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16365422158Homeobox protein Meis1
4xrs_B4e-16365422158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.10030.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G069700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288670.0CT028867.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443237.10.0BEL1-like homeodomain protein 1
RefseqXP_024443238.10.0BEL1-like homeodomain protein 1
RefseqXP_024443239.10.0BEL1-like homeodomain protein 1
RefseqXP_024443240.10.0BEL1-like homeodomain protein 1
RefseqXP_024443241.10.0BEL1-like homeodomain protein 1
RefseqXP_024443242.10.0BEL1-like homeodomain protein 1
RefseqXP_024443243.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLB9IIL10.0B9IIL1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s07040.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-171BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]