PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G068200.1
Common NamePOPTR_0016s06860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YA
Protein Properties Length: 322aa    MW: 35033.8 Da    PI: 9.5038
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G068200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA958.4e-30154210158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RR++Rak+  e+k  ++srkpy+h SRh hA+rRpRg+gGrF
  Potri.016G068200.1 154 DGPIYVNAKQYHGIMRRRKSRAKAVLENKS-TNSRKPYMHYSRHLHAMRRPRGCGGRF 210
                         57***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-32152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.189153213IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21156178IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.3E-26156210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-21187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTMKIKEHEG IVHNPSGQLS TVPWWSAFGS QTVTGESCGL LKALPVEQFA IGGEAATKQA  60
RMSTDQRLDK GNITQFTIFP GDCKTSGYGQ KNLQAAISLQ TALPEYRAHF DLGFGQPVIC  120
TKYPLVDQCY GVFSTFGPQI SGRIMLPMSM TADDGPIYVN AKQYHGIMRR RKSRAKAVLE  180
NKSTNSRKPY MHYSRHLHAM RRPRGCGGRF LNTKELNEGK GTMEAKKAGD FQPSQATGSQ  240
NSEVLESGGA TLNSSMEANG GGSIFSGSEV TSMYNRGELD LLQINRLGPT FHSFSGMMDR  300
GHGIVMPSKW VAAADNCCNL K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-16156215463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172MRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G068200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101321e-67AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322774.20.0nuclear transcription factor Y subunit A-10
RefseqXP_002322775.20.0nuclear transcription factor Y subunit A-10
TrEMBLB9IIJ30.0B9IIJ3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06860.30.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.28e-62nuclear factor Y, subunit A10