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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.016G056500.1 |
Common Name | POPTR_0016s05680g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HSF |
Protein Properties |
Length: 229aa MW: 26486 Da PI: 7.2967 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.016G056500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 110.4 | 1.3e-34 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl k+y ++ed++++e+isw+e+g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+kg++e
Potri.016G056500.1 19 FLLKTYMLVEDPATDEVISWNEEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGERE 100
9****************************************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++i+r+k
Potri.016G056500.1 101 LLCQIRRRKA 110
*******985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MANDKGLLEY VRKSTPPPFL LKTYMLVEDP ATDEVISWNE EGTGFVVWQP AEFARDLLPT 60 LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERE LLCQIRRRKA WSSKQQPIAP 120 IQVTTQEFEE DQRSSSTSSS SEYTTLVDEN KRLKKENGVL STELTSMNRK CKELLDLVAK 180 YAHLEKEEED ERPKLFGVRL EAEGDRERKR KRAEISESAS ILLSQSCI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC217587 | 0.0 | AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence. |