PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G053300.2
Common NamePOPTR_0016s05370g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 760aa    MW: 85476 Da    PI: 5.1473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G053300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.48e-09698751147
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                         + +WT+ E+e+l+++v+++ ++    Wk I ++      +gRt  ++k++w++ 
  Potri.016G053300.2 698 KVPWTAHEEEILKEGVQKFASDgkyPWKDILEYGSsvfsNGRTTIDLKDKWRNM 751
                         579******************************99*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.5E-6408469IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.98E-7409470IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS512949.717693758IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-11693754IPR009057Homeodomain-like
SuperFamilySSF466895.53E-11695753IPR009057Homeodomain-like
SMARTSM007171.8E-5697754IPR001005SANT/Myb domain
CDDcd116601.03E-14699753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MVALRCLEDL FCRSDNGIAN DVTSKELKVT FDLSESCEDV LQSILQETSV SDLNRGGPEL  60
LKWDIHPFIM HKRACMPKCA LEKVKDAILE GIHPYASLKE YSELVNANDR GNRITTDYGD  120
DGAPVGRIGG SDTDGQINPP EESSIPLLHE NENVVEDNSY NRNLLHFERE RSGSASQNLA  180
GDHEDQGCVD GDHLQPQAKR FKEDALHDNL SMGQISSTPP QHKDMVEDSF EMVVEDSENR  240
DFHLEKESSQ GGLEGSIPVE NDHDEDVGID RHGHSLDADN AFQHNQHEIA HNANKMPLSG  300
DGLHQYSFVD EINRAEPRKS NAAPSVGTSD RLFVNGNKGK SDHSGQQKPS NSVSSNGFHR  360
NTDADEREAG TDHLSEEDES NESDEYEQER VDVGLRKSHF LSSQYMLSHD SLAEANWTDQ  420
NLCIKCCKDG QLLVCGAGSC SLVIHENCLV FSPHFDERGD FYCPFCAYSL AISEYLEAKK  480
KAYSARKELK LFIETRQEYR SNKHTQRLLS KRHGSSRQNE DKDLLNKFLD YENLVGEKRK  540
QSNNRGQISE GNDHQFQKGK GKKKQVEPLA SCIGVNSLCR EEEPDVNVRT NHISTVEKEG  600
EEVVQENSSG TELDINQHQV SVDPKYSVDN HLCKEKEIVS GSQRTDGRRQ KAVCAISSDG  660
GETSGDEDDK SISTNYFIRF RKRERQYTPA MPQSRRKKVP WTAHEEEILK EGVQKFASDG  720
KYPWKDILEY GSSVFSNGRT TIDLKDKWRN MCKLSPKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558564GKGKKKQ
2680697RKRERQYTPAMPQSRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G053300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826862e-46AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443805.10.0uncharacterized protein LOC7484006 isoform X1
TrEMBLB9II560.0B9II56_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05370.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-08MYB_related family protein