PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G049200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 437aa    MW: 48105.6 Da    PI: 8.2215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G049200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-11145184544
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                         k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  Potri.016G049200.1 145 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 184
                         7789************************876666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-8139187No hitNo description
SMARTSM003383.2E-6141196IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289143187IPR004827Basic-leucine zipper domain
PfamPF001701.9E-8145185IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-7145187No hitNo description
CDDcd147086.63E-22145194No hitNo description
PROSITE patternPS000360148163IPR004827Basic-leucine zipper domain
PfamPF141445.7E-32236309IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MQSSSSSSSI PGNFISKDAG AYDMGELDQA LFLYLDGQDP STVNQDQRQS GAGMRPPTLN  60
IFPSQPMHVE PSSTKANITG ASTGLVSSAT GGSKGPSEPS MELANTRNNS APGPEPAKAI  120
KRQGNRKGPA RSSSELEGPK TPDPKTLRRL AQNREAARKS RLRKKAYVQQ LESSRIKLTQ  180
LEQELQRART QGIFLGGGGL LGGEQGIPVG VTNISADAAF FDMEYARWLE ENHRLMCELR  240
AAVQEHIPEN ELRLFVGNCL AHYDEMMNLK SVVAKTDVFH LVSGMWKTPA ERCFMWMGDF  300
RPSELIKIIV GQIEPLTEQQ ILGIYGLQQS TQENEDALSQ GLEALNQSLS NTIASESLIC  360
PPNMANYMGQ MTVAMNKLST LEGFVRQADN LRHQTIHRLH QLLTTRQAAR CLLAVAEYFH  420
RLRALSSLWV ARPRQE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G049200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443228.10.0bZIP transcription factor TGA10 isoform X1
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3N7HQ950.0A0A3N7HQ95_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein