PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G037300.2
Common NamePOPTR_0016s03680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 264aa    MW: 29846.6 Da    PI: 6.9563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G037300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1371122155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR++iNs ++ Lr+llP a   +++Kls   ++ ++  YI +Lq
  Potri.016G037300.2  71 KKLNHNASERDRRKKINSLYSSLRSLLPAA---DQRKLSIPYTVSRVLVYIPKLQ 122
                         6789**************************...******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1563135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.51670121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1471138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-1171122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-876127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLEELSPISL FSTFGWPLEE AISHEQLYSF RDGETPESFT HFPPSQPDVR QLDRSTSFTA  60
HSGSGDPSMA KKLNHNASER DRRKKINSLY SSLRSLLPAA DQRKLSIPYT VSRVLVYIPK  120
LQQQVERLIQ RKEELLSKLS RQADDLTHQE NQRKGTMYSS LSSVSASRLS DREVVIHIST  180
NKLHRSSLSE ILVNLEEAGL LLLNSSSFES FGGRVFYNLH LQAMEGTYTV ECEALNERLV  240
SLCEKRESLF PLNSSSPYSN CVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G037300.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443393.10.0transcription factor ORG2 isoform X2
TrEMBLB9IHR71e-173B9IHR7_POPTR; Uncharacterized protein
STRINGPOPTR_0016s03680.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-48bHLH family protein