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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.016G027900.1 |
| Common Name | POPTR_0016s02780g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NAC |
| Protein Properties |
Length: 341aa MW: 38186.6 Da PI: 4.6206 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.016G027900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 77.2 | 3.7e-24 | 9 | 139 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgk.rknra..tksgyWk 84
ppGf+F Pt+eel+++yL +k++g+ + ++ + ik+ d+y ePw++ +k+++ +++ +yf ++ +kk+++g + nr+ t+ g+W+
Potri.016G027900.1 9 PPGFKFVPTEEELINYYLYNKIHGRFHGEDATlIKDYDLYGEeEPWEIFNKFQGhkfGDNGLYFLTTLHKKTTNGIkNMNRSvgTHGGTWH 99
89**********************997776656******97549****75443333388899**********99862567744588***** PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
g kev+s++g ++g+kk + ++ ++ k++k W++ ey
Potri.016G027900.1 100 GDGG-KEVKSSEGVVIGTKKRFRYH--KHGKPVKDGWILLEYG 139
9998.789998**************..556666********95 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MENGLPRPPP GFKFVPTEEE LINYYLYNKI HGRFHGEDAT LIKDYDLYGE EEPWEIFNKF 60
QGHKFGDNGL YFLTTLHKKT TNGIKNMNRS VGTHGGTWHG DGGKEVKSSE GVVIGTKKRF 120
RYHKHGKPVK DGWILLEYGS ESISENIVIS QLKKSERGSS NDKEPTSRKR KHINAEVFEV 180
AEDDDILKIM QSIVINSIPI RSPALEPQQI IQNQDTWLEA ATVSMELGAS VTVDSGPDLS 240
LAQEPQQITA NQEMWLEAAS VAWENDGGFS TAYSFDDEIS FVNGEPVGLQ FEPGLGNFIQ 300
EPMINEHQQM ALACFSGNHE EKPISVEDYE LMGLSEATFQ *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-13 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-13 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-13 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-13 | 9 | 138 | 18 | 140 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swm_B | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swm_C | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swm_D | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swp_A | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swp_B | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swp_C | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 3swp_D | 3e-13 | 9 | 138 | 21 | 143 | NAC domain-containing protein 19 |
| 4dul_A | 4e-13 | 9 | 138 | 18 | 140 | NAC domain-containing protein 19 |
| 4dul_B | 4e-13 | 9 | 138 | 18 | 140 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
