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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.016G027800.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
GRAS |
| Protein Properties |
Length: 396aa MW: 46567.4 Da PI: 8.1468 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.016G027800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 246.8 | 8.5e-76 | 7 | 364 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+ L+e A+a++ g+l la++lL++++ l+s + +++++++ f+eAL +r+++ ++ lp ++s n ++ ++ P++
Potri.016G027800.1 7 NKLMESAKAIEGGNLDLAESLLEEIRYLVSTEPnIATRKVVKNFAEALVRRVNGLHPRYP--LPLVPSS--NLEDFYNY-----VFYPFYW 88
689*************************9888846*******************333322..3333332..34444332.....345**** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
fs++t+ +aI g++ +H+iDf+++ + W L++ La++p+g ps+R+T ++++ s + + l++++++L++ Ae+l+v+fe + +v
Potri.016G027800.1 89 FSYFTTTHAIHAFRTGNKPLHVIDFSVMlYTSLWHDLMRDLANQPGGLPSFRLTSIVPKLSRNFDYLQQIRSKLTRAAERLRVDFELRQVV 179
**************************9747899*************************9999****************************8 PP
GRAS 183 akrledl...eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
a++ +++ ++++r + +E+l+V ++++lh+ll+++++le+ vL+ vk+l+P+++++veqea+hn+++F++rf+++++yys++f
Potri.016G027800.1 180 ANNAKEIiecCVSKIRRTReDEMLVVRWSFSLHKLLSQEGALEQ----VLSKVKDLKPDIMIIVEQEANHNGSDFMDRFVKSFQYYSTIFH 266
88777664446888854445****************99999999....******************************************* PP
GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
sl e ++ r+ + + r ++r+i nvvaceg +r+erhe+l +W+erl +aGF+p++ + k+ ++ l+ yr++e++g +
Potri.016G027800.1 267 SLeEDNFYRDVDGMELWKRN-FRRQIGNVVACEGIDRVERHESLYQWQERLLHAGFHPMQ---QWWKNDRHTLQLK----YRIQEKDGHPM 349
**888888888888877777.*************************************96...4555666666654....69********* PP
GRAS 360 lgWkdrpLvsvSaWr 374
l+ ++ pL+++S+W+
Potri.016G027800.1 350 LYRHNCPLLVTSVWK 364
**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MANLLFNKLM ESAKAIEGGN LDLAESLLEE IRYLVSTEPN IATRKVVKNF AEALVRRVNG 60
LHPRYPLPLV PSSNLEDFYN YVFYPFYWFS YFTTTHAIHA FRTGNKPLHV IDFSVMLYTS 120
LWHDLMRDLA NQPGGLPSFR LTSIVPKLSR NFDYLQQIRS KLTRAAERLR VDFELRQVVA 180
NNAKEIIECC VSKIRRTRED EMLVVRWSFS LHKLLSQEGA LEQVLSKVKD LKPDIMIIVE 240
QEANHNGSDF MDRFVKSFQY YSTIFHSLEE DNFYRDVDGM ELWKRNFRRQ IGNVVACEGI 300
DRVERHESLY QWQERLLHAG FHPMQQWWKN DRHTLQLKYR IQEKDGHPML YRHNCPLLVT 360
SVWKHSDPSQ FSDGELPYSI LFLSVMLSPY RCLCS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213918 | 0.0 | AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence. |
