PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Potri.016G027300.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 122aa MW: 13235.3 Da PI: 5.6928

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.016G027300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	28.1	2.4e-09	9	69	5	64
GRAS 5 LlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal 64 L+ecA+ ++ g+l +a++lLa ++ las+++ +++ ++ +y +eAL +r ++ + + + + Potri.016G027300.1 9 LVECAKKIEGGKLDAADSLLAVIQSLASKEAsTSTWKVFKYCAEALVRRAYGIRPPCPSPF 69 89**********************9999989**************999666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.98	1	121	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-7	9	69	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MAFIFSLGLV ECAKKIEGGK LDAADSLLAV IQSLASKEAS TSTWKVFKYC AEALVRRAYG 60 IRPPCPSPFV PFLYEHEYKF DPLYLFDAIT SEHAIADALN PINDSTLLTS PSCSIFRGGI 120 P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.016G027300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213918	0.0	AC213918.1 Populus trichocarpa clone ACSB2341-L13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443927.1	4e-34	uncharacterized protein LOC112324561
TrEMBL	A0A2K1X9T3	2e-83	A0A2K1X9T3_POPTR; Uncharacterized protein
STRING	POPTR_0016s02720.1	1e-32	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	7e-07	RGA-like protein 3

Link Out ? help Back to Top
Phytozome	Potri.016G027300.1