PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.016G018300.4 | ||||||||
Common Name | POPTR_0016s01980g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 844aa MW: 96537.5 Da PI: 7.4571 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 85 | 186 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ ++r+ ++t+Cka+++vk++ dgkw+++ Potri.016G018300.4 85 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprsrqtkqdPENGTSRRSCSKTDCKASMHVKRRPDGKWVIH 175 5*******************************************9999999998877766666679999********************** PP FAR1 80 kleleHnHela 90 ++++eHnH l Potri.016G018300.4 176 SFVKEHNHGLL 186 ********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 85 | 187 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-29 | 285 | 376 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.273 | 565 | 601 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-7 | 576 | 603 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.8E-4 | 577 | 600 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MDIDLRLPSG DHDKEGEEPN VNNMLSEVKL HNGDAETGNV VDVAEEILSI EGGDVNSPTP 60 TTFKEDTNLE PLSGMEFESH GAAYSFYQEY ARSMGFNTAI QNSRRSKTSR EFIDAKFACS 120 RYGTKREYDK SFNRPRSRQT KQDPENGTSR RSCSKTDCKA SMHVKRRPDG KWVIHSFVKE 180 HNHGLLPAQA VSEQTRRMYA AMAQQFAEYK NVAGLKNDPK NSFDKGRNLG LEAGETKILL 240 DFFTKMQNMN SNFFYAVDLG EDQRLKNLFW ADAKSRHDYG NFSDVVSFDT TYVRNKYKMP 300 LALFVGVNQH YQFMLLGCAL ISDESAATYS WLMQTWLRAM GGQTPKVIIT DQDKAMKLVI 360 SEVFPSAHHC FFLWNILGKV SENLGSVIKQ NENFMAKFDK CIFRSWTENE FGKRWWKILD 420 RFELRENEWM QSLYEDREQW VPIYMRGAFL AGMSTVLRSE STNSHFDKHV HKKTTVQEFV 480 RQYEPILQDR YEEEAKADSD TWNKQPSLKS PSPLEKSVSG VYTHAVFKKF QVEVLGVVAC 540 HPKMESQDEI SVSFRVQDLE KHQDFTVLWN QMRLEVSCIC RLYEYKGFLC RHALVVLQMC 600 QQSAIPSQYI LKRWTKDAKS KHLLGEESEK VQSRVQRYND LCQRALKLSE EASLSQESYN 660 IAFRALGEVF GNCISMNNSN KSLVEAGTST THGLLCIEDD NQNRSMTKTN KKKNQAKKRK 720 VNSEQEITTD GPQDSLQQMD KLSSRAVALE GYYGTQQGVP GMVQLNLMAP TRDNYYSNQQ 780 TIQGLGQLNS IAPSHDGYYG TQQSMNGLGQ MDFFRTPTGF AYSIRDDPNV RTAQLHDDGS 840 RHA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1132 | 0.0 | bud| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.016G018300.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148105 | 0.0 | EF148105.1 Populus trichocarpa clone WS0127_J20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323176.2 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_024443449.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_024443450.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A2K1X9A3 | 0.0 | A0A2K1X9A3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s01980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.016G018300.4 |
Entrez Gene | 7453722 |