 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.016G009700.1 |
| Common Name | POPTR_0016s01110g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 547aa MW: 61417.1 Da PI: 5.3271 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.016G009700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 410.4 | 1.6e-125 | 176 | 545 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l+++Ll+cA+avs+ d ++a l+ l +++s +g+p+qRl ay++e+L+arl s+s++y+al++++ ss+ ++++ ++++++P+
Potri.016G009700.1 176 LKHVLLACADAVSNADIQRAAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPI---SSDLMTYMGILYQICPYW 263
689******************************************************************9...9999999*********** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
kf++ aN I eave e r+HiiDf+i qG QW L+q La Rp+gpp +RiTgv++++s + l +g+rL+k+Aee++vpfef+
Potri.016G009700.1 264 KFAYTSANVVIQEAVEYEPRIHIIDFQIAQGSQWSVLMQMLAYRPGGPPVIRITGVDDSQSAhaRGGGLDIVGQRLSKVAEECNVPFEFHD 354
**********************************************************9988889999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
va + +++le+Lrv+pgEa++Vn+ + lh+++desv++ ++rd+++++vkslsP++v+++eqe+++n+++F+ rf+e+l+yy+a+f+s+
Potri.016G009700.1 355 -VAMDGCEVQLEHLRVQPGEAVVVNFPYVLHHMPDESVTTWNHRDRLIRMVKSLSPRIVTLIEQESNTNTKPFFPRFIETLDYYTAMFESI 444
.6888999*********************************************************************************** PP
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
+++ p+++++ri+ E+++++r+ivn++ace+aer+erhe l+kWr+r+++aGF+++pls+++++ ++ +l++++ + y+v+e++ +l+l W
Potri.016G009700.1 445 DVGRPKDDKQRINAEQHCVARDIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLSSSVTTAVRDMLKEYD-RNYSVQERDWALYLRW 534
**************************************************************************.55************** PP
GRAS 363 kdrpLvsvSaW 373
++r + + SaW
Potri.016G009700.1 535 RHRDMATSSAW 545
*********** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 547 aa
Download sequence Send
to blast |
MQTSQKHRSA GIHRFYHQPV QEIDPYGLSH IQILDSNMYS DGGSQGAAIS FQTDQGEFFT 60
LESSSATAGF VNYDSPAASV SSNRSPFSPQ GSHSCISDPH HSPDTVYGSP LSGSSSADED 120
IILRQKLREL EISLLGPESD ITDSGSFCFV SGGYQAESSA SWDWNQMMEV IPRLDLKHVL 180
LACADAVSNA DIQRAAGLMH VLDQMVSVSG EPIQRLGAYM LEGLRARLEL SGSKIYRALK 240
CEAPISSDLM TYMGILYQIC PYWKFAYTSA NVVIQEAVEY EPRIHIIDFQ IAQGSQWSVL 300
MQMLAYRPGG PPVIRITGVD DSQSAHARGG GLDIVGQRLS KVAEECNVPF EFHDVAMDGC 360
EVQLEHLRVQ PGEAVVVNFP YVLHHMPDES VTTWNHRDRL IRMVKSLSPR IVTLIEQESN 420
TNTKPFFPRF IETLDYYTAM FESIDVGRPK DDKQRINAEQ HCVARDIVNM IACEEAERVE 480
RHELLAKWRS RFTMAGFNQY PLSSSVTTAV RDMLKEYDRN YSVQERDWAL YLRWRHRDMA 540
TSSAWS*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
