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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.015G143500.1 |
| Common Name | POPTR_0015s13180g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 297aa MW: 32910.2 Da PI: 6.8325 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.015G143500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd llv+++++ G g+W++ +++ g+ R++k+c++rw +yl
Potri.015G143500.1 14 KGPWTPEEDHLLVQYIQKNGFGSWHSLPKKAGLFRCGKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr+++ E+ +++++ lG++ W+ Ia+ ++ gRt++++k++w+++l
Potri.015G143500.1 67 RGRFSPAEEATIIHLHGILGNR-WAHIASQLP-GRTDNEIKNFWNSHL 112
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MGRGPCCDQD GVKKGPWTPE EDHLLVQYIQ KNGFGSWHSL PKKAGLFRCG KSCRLRWTNY 60
LRPDIKRGRF SPAEEATIIH LHGILGNRWA HIASQLPGRT DNEIKNFWNS HLKKRLASIG 120
PKLQINQSSS SNPINIMCES PSCHMVQWES ARVEAEARLS MQSLLVKHTS TVKGHPDIFM 180
QLWNSEVGEA FRNVKGKDVE TCESLVSDAH PCVKIESVLL DDTAPATPNK TSTSIDTTQE 240
QEDTCKPSAD VMSVSDSIGS NEFADSSDTA LKLLLDFPGG NGMEFIRENL LGFRCD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
