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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G141800.1 | ||||||||
Common Name | POPTR_0015s13340g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 754aa MW: 83020.4 Da PI: 5.9077 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1e-20 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k ++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Potri.015G141800.1 58 RKKYNRHTANQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 113 79999************************************************999 PP | |||||||
2 | START | 181.2 | 5.9e-57 | 263 | 485 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k a++e+p W ks e +n +e++++f++ + + +ea r+sgvv +++ +lve+l+d++ W e+++ +a Potri.015G141800.1 263 LALAAMDELIKIAQVESPIWIKSLdggkEVLNHEEYMRTFPPCIGmkpsnFVIEATRESGVVLANSLDLVETLMDVN-GWVEMFPsliaRA 352 6899**********************9999************999999999**************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +t++ +ssg galq + ae+q++sp vp R + f+R ++ql +g+w+++dvSvd +q++ + + v +++lpSg++i+++ ng +k Potri.015G141800.1 353 ATIDIVSSGmggtksGALQMIHAEFQVISPFVPvRQVKFLRLCKQLAEGVWAVADVSVDGNQENLNAQTPVTCRRLPSGCIIQDMNNGCCK 443 ****************************************************************999999999****************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 vtwveh +++++ +h l+r++++sg+ +ga++w a+lqr+ e Potri.015G141800.1 444 VTWVEHSEYDESAVHRLYRHILNSGMGFGAQRWIAALQRHYE 485 ***************************************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.09E-19 | 44 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 45 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.253 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 57 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-18 | 58 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.73E-19 | 58 | 115 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.624 | 253 | 489 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.92E-32 | 254 | 485 | No hit | No description |
CDD | cd08875 | 2.40E-114 | 257 | 485 | No hit | No description |
SMART | SM00234 | 1.6E-40 | 262 | 486 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-49 | 263 | 485 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-4 | 326 | 483 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.59E-15 | 514 | 749 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MPKNKMDSHG DMGLLGEHFD PSLVGRMRED GYESRSGSDN IEGASGEDQD AGDYQRPRKK 60 YNRHTANQIQ ELESFFKECP HPDEKQRSEL SRRLGLESKQ IKFWFQNRRT QMKTQLERHE 120 NAILRQENDK LRAENELLKQ NMSDPICNNC GGPVVPVPVS YEQQQLRIEN ARLKDELGRV 180 CALANKFLGR PLTSSASPVP PFGSNTKFDL AVGRNGYGNL GHTDNTLPMG LDNNGGVMMP 240 LMKPIGNAVG NEVPFDRSMF VDLALAAMDE LIKIAQVESP IWIKSLDGGK EVLNHEEYMR 300 TFPPCIGMKP SNFVIEATRE SGVVLANSLD LVETLMDVNG WVEMFPSLIA RAATIDIVSS 360 GMGGTKSGAL QMIHAEFQVI SPFVPVRQVK FLRLCKQLAE GVWAVADVSV DGNQENLNAQ 420 TPVTCRRLPS GCIIQDMNNG CCKVTWVEHS EYDESAVHRL YRHILNSGMG FGAQRWIAAL 480 QRHYECMAML LSPTILGEDQ TVINLGGKKS MLKLARRMVD SFCSGVCAST LHNWGNLVVE 540 SVSEDVRILT RKIINEPGEP DGIVLSVSTS VWLPVSQQRL FDFLRDEQSR SQWDILSNGG 600 ILQEMVQIPK GQGHWNTVSV LRSTAVDANA SDNMLILQET WNDVSGSLVV YAPVDVQSVS 660 VVMNGGDSTY VALLPSGFVI LPGNSFSNGE PNNCNGNPAK RDCDGNSGGG SFLTVGFQIL 720 ASNLPSAKLT VESVKTVHNL ISCTMQRIKT AFN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G141800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442055.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A2K1XMT6 | 0.0 | A0A2K1XMT6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s13340.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G141800.1 |
Entrez Gene | 7474034 |
Publications ? help Back to Top | |||
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