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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.015G141100.1 |
Common Name | POPTR_0015s13390g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
HSF |
Protein Properties |
Length: 287aa MW: 31751.8 Da PI: 4.8624 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.015G141100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 112.6 | 2.7e-35 | 35 | 125 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+++i++d++++++isw+e+g+sfvv++++ f++++Lpk+Fkh+nf+SFvRQLn+YgF+kv ++ weF+++ F+kg+k+
Potri.015G141100.1 35 FLTKTFKIVDDHTIDDVISWNEDGSSFVVWNPTLFSRDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRKGEKN 116
9*****************************************************************99.........************** PP
XXXXXXXXX CS
HSF_DNA-bind 93 llekikrkk 101
ll++i+r+k
Potri.015G141100.1 117 LLCEIQRRK 125
*******97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MASPLPVEQN SGETPPSPLA AAAGGETSRS IPTPFLTKTF KIVDDHTIDD VISWNEDGSS 60 FVVWNPTLFS RDLLPKFFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNECF RKGEKNLLCE 120 IQRRKLVATV AQVVAAPAAV KVIKTSSNSS SDEQVVISTR SSSPGLSLEL LDENERLRKE 180 NVRLKGELTE MKSLCGNIFS LVSDFESLRE EEEEEVRKVL DLLPMKEEVG DGARIFGVEV 240 GVKRGRELSG DMEVEEDGMQ LRLRQPGGGS SDGVKIEVNG SRNGDR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP014006 | 0.0 | KP014006.1 Populus simonii heat shock transcription factor B2a2 (HsfB2a2) mRNA, complete cds. |