 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.015G134800.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 298aa MW: 34748.2 Da PI: 10.08 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.015G134800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 92.6 | 1.9e-29 | 61 | 111 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e++s
Potri.015G134800.1 61 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSRGKLFEFCS 111
69***********************************************96 PP
|
| 2 | K-box | 92.4 | 8.1e-31 | 130 | 225 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
+g++ e+ +++l+qe+++L+++ e+Lqr+qR++lGe+Le+L++keL+++e+qL+k l++ R++K++l+++ +eel+k+e++l+e+n++L
Potri.015G134800.1 130 EGTNIPEEGSQTLYQEVSRLRARCESLQRSQRNFLGEELEPLTVKELKKIEKQLDKTLSEARQRKTQLMFDRVEELRKREQDLKEKNQQLW 220
6677889999********************************************************************************9 PP
K-box 96 kklee 100
klee
Potri.015G134800.1 221 IKLEE 225
99986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.6E-40 | 53 | 112 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.539 | 53 | 113 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.02E-31 | 54 | 136 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.82E-40 | 54 | 128 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 55 | 109 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-30 | 55 | 75 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 8.7E-26 | 62 | 109 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-30 | 75 | 90 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.1E-30 | 90 | 111 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 14.921 | 139 | 229 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 5.2E-25 | 139 | 223 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MMSSSYFVTQ RAKTQLGIPL MEKQPIYRKR VVLSFLTLFL VLLGFLLQEG KQMGRGKVVL 60
ERIENKISRQ VTFSKRRNGL LKKAYELSLL CDAEVALIIF SSRGKLFEFC SSTDINKTLQ 120
RYQQCCYSTE GTNIPEEGSQ TLYQEVSRLR ARCESLQRSQ RNFLGEELEP LTVKELKKIE 180
KQLDKTLSEA RQRKTQLMFD RVEELRKREQ DLKEKNQQLW IKLEEVQRLP AIHGVGDPIK 240
GDGNRQIMMD PSKFNYVEPQ PSLQMDQHQQ FVSQEQGFDP RTSIRGKNKY PTPKWFP*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
