 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.015G125500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 169aa MW: 19167.9 Da PI: 8.9428 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.015G125500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 82.2 | 3.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+ien + rqvtfskRr g++KK +ELSvLCdae+ +i+fss+g+l e++s
Potri.015G125500.1 10 KIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGNLSEFCS 59
69**********************************************96 PP
|
| 2 | K-box | 55.1 | 3.2e-19 | 78 | 147 | 8 | 76 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76
+ e++++e+ +el++++ke++ Lq + R ++Ge+L+sL +++L +Le+qLe s++k+R++K+++ + +
Potri.015G125500.1 78 RvSESNDSEQILKELKRIRKETDDLQLSMRCYKGESLSSLHYEDLVELEKQLECSVNKVRARKHQVATLE 147
44567888999******************************************************97654 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 28.735 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.5E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.10E-33 | 2 | 72 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.07E-27 | 3 | 78 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.7E-16 | 80 | 145 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.375 | 85 | 168 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MARGKIAITK IENRTARQVT FSKRRVGLFK KTHELSVLCD AEIGLIVFSS NGNLSEFCSE 60
SSSIPHIIKR YEISKGMRVS ESNDSEQILK ELKRIRKETD DLQLSMRCYK GESLSSLHYE 120
DLVELEKQLE CSVNKVRARK HQVATLEQQH DGEARGTAEN ARGIPVFW*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
