![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.015G105200.3 |
Common Name | POPTR_0015s11650g |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
bHLH |
Protein Properties |
Length: 484aa MW: 52980.2 Da PI: 6.35 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.015G105200.3 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ptr&pid=Potri.015G105200.3) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 20.9 | 6.6e-07 | 374 | 398 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS
HLH 7 erErrRRdriNsafeeLrellPk.a 30
++ErrRR+++N+++ Lr+++Pk +
Potri.015G105200.3 374 MAERRRRKKLNDRLYMLRSVVPKiS 398
79********************954 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MLSRLNSTSV WLEDHKEEQD STTNHLHHHH NNINNTTAAG CGGVMLEGRE EMGSLSTFKS 60 MLEVEDEWYV SNNNNTIHQT HQDSIKDLTF SPGLGDPDNL LLHQVDSSSS CSPSSSVFNN 120 LDPSQVHYFM HPKPSLSSLL NVVSNNPLEH GFDLSEIGYL ENQGTNSAAT ANVSALLNRG 180 GGVLGNLGNF SDLSSNSQIS IPNLCSDPQF SSSRMLQLPE NGPGLTSFRG FDENSGNQLF 240 LNRSKLLRPL ETYPSMGAQP TLFQKRAALR KNLGDNGGNL GLLSGIDRDK GKSEMTQISE 300 ENDKKRKFSS GDDFLEDVSI DGSGLNYDSD EFTENTKVEE IGKNGGISSK ANSGVTGGVD 360 QKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKV EVRVREGRAV NIHMFCGRKP 420 GLLLSTMRAL DNLGLDIQQA VISCFNGFAM DIFRAEQCKE GQDMHPDQIK AVLLDSAGFH 480 GMM*
|
Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Ptr&pid=Potri.015G105200.3) |
No. |
Start |
End |
Sequence |
1 | 363 | 381 | KKKGLPAKNLMAERRRRKK |
2 | 375 | 382 | ERRRRKKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF405966 | 0.0 | EF405966.1 Populus trichocarpa inducer of CBF expression 1 (ICE1) mRNA, complete cds. |