PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G100400.2
Common NamePOPTR_0015s11250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 428aa    MW: 46178.5 Da    PI: 4.7778
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G100400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.2e-12109147444
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         WT+eE ++l++ v ++G++ W+++a+ +  ++t  +c+s++
  Potri.015G100400.2 109 WTEEETLRLLESVSRHGND-WDLVAQNVK-TKTKLDCISKL 147
                         *******************.********9.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.83E-9100145IPR009057Homeodomain-like
PROSITE profilePS5129314.904104155IPR017884SANT domain
SMARTSM007171.8E-8105153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-7107144IPR009057Homeodomain-like
PfamPF002491.5E-11108147IPR001005SANT/Myb domain
CDDcd001672.64E-8109146No hitNo description
PfamPF164956.8E-20331405IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPDKLKPISV GSVQSSAEGS GGGGSGTGLK LPPLASYSDV FGELVGKKKE VVCGNCGGSC  60
DSGQYEHSKG DYLICQKCFN DGTYGENKSK DDFKLKVSAE NNGSNAAVWT EEETLRLLES  120
VSRHGNDWDL VAQNVKTKTK LDCISKLIEL PFGDLILSST YGKGNSSGQI GSTNNSKQVP  180
AAPSEHQDDT KHEDQLHEQM NANEEKGDVM DDGPLLKRRR ITSVSDAGGS LMKQVALIST  240
MVGPDITAAA AEAAVAALCD ETACPREIFD GEEDFPSNGF SSPSFHSKSK RVDEVDASEV  300
KQTPTQSVNE EASAWQNDIP LSLRLRAAVA TTLGAAAAHA KLLADQEDRE VENLMATIVE  360
TQLKKLHHKI KHFDDLELIM EKEYAELDEL TESLTEERID VLQRAIRAGI SKSRDHAPIK  420
FHMSNVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216220KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G100400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322279.30.0SWI/SNF complex subunit SWI3A
TrEMBLA0A2K1XKV50.0A0A2K1XKV5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11250.10.0(Populus trichocarpa)