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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G089000.1 | ||||||||
Common Name | POPTR_0015s10040g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1645aa MW: 186251 Da PI: 9.0467 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 1528 | 1553 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L H r+ + Potri.015G089000.1 1528 YQCDidGCTMSFGSKQELAMHKRNiC 1553 99********************9877 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00037 | 1553 | 1575 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H Potri.015G089000.1 1553 CPvkGCGKKFFSHKYLVQHRRVH 1575 9999*****************99 PP | |||||||
3 | zf-C2H2 | 11.6 | 0.00085 | 1611 | 1637 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H Potri.015G089000.1 1611 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1637 89********************99666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 4.8E-14 | 15 | 54 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.495 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 3.8E-14 | 17 | 50 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 4.39E-27 | 106 | 163 | No hit | No description |
SMART | SM00558 | 7.3E-50 | 182 | 351 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 33.91 | 182 | 351 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 4.39E-27 | 200 | 365 | No hit | No description |
Pfam | PF02373 | 8.4E-37 | 215 | 334 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 1522 | 1550 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8 | 1528 | 1550 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.383 | 1551 | 1580 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0045 | 1551 | 1575 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.88E-6 | 1552 | 1587 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 1552 | 1579 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1553 | 1575 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-9 | 1580 | 1605 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.614 | 1581 | 1610 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 1581 | 1605 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1583 | 1605 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.52E-10 | 1591 | 1635 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.7E-10 | 1606 | 1634 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.85 | 1611 | 1637 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.468 | 1611 | 1642 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1613 | 1637 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0035067 | Biological Process | negative regulation of histone acetylation | ||||
GO:0040010 | Biological Process | positive regulation of growth rate | ||||
GO:0045815 | Biological Process | positive regulation of gene expression, epigenetic | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0071558 | Molecular Function | histone demethylase activity (H3-K27 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 1645 aa Download sequence Send to blast |
MAAPKVCQWL KNLPLAPEYR PTLSEFQDPI AYIFKIEKEA SQYGICKIIP PVLPSAKKTT 60 LSNLNRSLCA RNGGSSAPTF TTRQQQIGFC PRKPRPVQKP VWQSGETYTF QEFETKARTF 120 EKNYLKKFFK KGALSPLEIE TLYWKATLDK PFSVEYANDM PGSAFSPRKK EGQGGVAGEG 180 MSVGDTEWNM RGVSRAKGSL LRFMKEEIPG VTSPMVYVGM MFSWFAWHVE DHDLHSLNYM 240 HMGAGKTWYG VPREAAVAFE EVVRVHGYGG EINPLVTFAV LGEKTTVMSP EVFISAGVPC 300 CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE AANIATPEWL MVAKDAAIRR ASINYPPMVS 360 HFQLLYDLAL EFCTRIPMNI IAKPRSSRLK DKQKGEGEML VKEQFVKNMI QNNDLLHILG 420 KGSSVVLLPR GSSDISVCSK LRVGSQLRDN PTLGLCSQKD VMKSSKSSGS GDILQDKNQE 480 INQVKGIFSV KAKFASLCER NRFSTLNGNE CSQSMNIGTE RGRSIHGDKL SDQRLFSCVT 540 CGILSFDCLA IIQPKEAASR YLMSADCSFF NDWAVGSGVT RDVFAVAGGI ANISEQNSSR 600 WVEKNTAAGF YDVPVQSPNY QIQMADQGVE VASSSAKQLE ASALGLLALN YGNSSDSEED 660 QVEADLSHHD EINMTNCPLE NKYQCQSSAF PSYKQKDYDA ATGGLPQSPS RLDERDDVPL 720 KANDMNPEHG DRRDDFKDKT DECSFGFPTG NLASIESNSL DGRYRDPMSM SHVSLNCSPI 780 VHDIEKTKFN RPIAPIENPD MPFTQRSDKD SSCMHVFCLE HAVEIEQQLR QIGGVHILLL 840 CHPEYPRIEG EAKLVSEELG IDHLWNDITF RDAAKEDEER IQSALDSEEA IPGSGDWAVK 900 LGINLFFSAN LSRSPFYSKQ MPYNSVIYNA FGLASSVSST PKFKVYGRRS GKPKKVVAGK 960 WCGKVWMSNQ VHPFLVISDH VDQDHEQEQE RSFHASATPD EKLEKKPQTS NKTETTRKSG 1020 RKRKITAGSR SIKKVKCLEA EEPDSEDSMG DNCHRQRVRC RRKWAKSVES DDAVSDDPLA 1080 EHVRQQYRRM RRSKQAKSIK RENTVSYASV ENKFQKQLKR AHRSDRAKFF ERRSAASDNS 1140 LDDNSDQWHE RAPRSTQAKY TESEDAFSDD SPEESSRWLH GRVPKSKQLK YIDKEGVISD 1200 DSMESDSHQH NRRVSRGKRA QLIKRNDVVS DDSLDESAYQ RLPRFSRSKL AKLIERENAV 1260 SDDSLDDNIH QHHGRVLKSK QAKFVEGEDA ISDDSHEDNT DWQRKRIPRS KMAKFVESED 1320 AASDDLQEDD THEHRRRIPK SKKMNFIERE VVISDDLWEN NTHRHPRKAP RSKQARFIER 1380 EDLVSDDLLE DNSDQQQKRI LRSKQKKSAT LCQMKQGTRK PKHIAPKMIK KETLKLIKQE 1440 RQIKQETPQQ RIGKSELNAR QFDSHSEEGV EGGPSTRLRK RPSKPPKQLE TKLKEKQQNS 1500 RKKLKDASAV KAPVGRKNVK IKDEEAEYQC DIDGCTMSFG SKQELAMHKR NICPVKGCGK 1560 KFFSHKYLVQ HRRVHIDDRP LKCPWKGCKM TFKWAWARTE HIRVHTGERP YVCAEEGCGQ 1620 TFRFVSDFSR HKRKTGHSAK KSRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 2e-78 | 8 | 365 | 7 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 2e-78 | 8 | 365 | 7 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1478 | 1504 | RKRPSKPPKQLETKLKEKQQNSRKKLK |
2 | 1491 | 1502 | KLKEKQQNSRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12495 | 0.0 | bud| catkin |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269|PubMed:24280387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00608 | ChIP-seq | Transfer from AT3G48430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G089000.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442279.1 | 0.0 | lysine-specific demethylase REF6 | ||||
Swissprot | Q5N712 | 0.0 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | A0A2K1XK92 | 0.0 | A0A2K1XK92_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s10040.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5648 | 32 | 50 |
Representative plant | OGRP4401 | 12 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 0.0 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G089000.1 |
Entrez Gene | 7463086 |
Publications ? help Back to Top | |||
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