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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.015G079100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
TALE |
| Protein Properties |
Length: 348aa MW: 38787.1 Da PI: 4.8144 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.015G079100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.8 | 2e-09 | 290 | 324 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
k +yp+++++ LA+++gL+++q+ +WF N+R ++
Potri.015G079100.1 290 KWPYPTEADKVALAESTGLEQKQINNWFINQRKRH 324
569*****************************885 PP
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| 2 | ELK | 30.3 | 9.1e-11 | 244 | 265 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK+ Ll KYsgy+++Lk+EFs
Potri.015G079100.1 244 ELKDKLLCKYSGYISTLKHEFS 265
9********************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MMEQLHGLQS TGTDYSLQVP SENAGAPLVA NYYHHMGFPS VAGEASFPFF GSEQLFCGSS 60
VSDAASMVVE LHHHHQQQQQ QRGGGGGCVG DNSNSNNSQE EASCAIRAKI ASHPLYPKLL 120
EAYIDCQKVG APPEMAYLLD EIREENDVSK RSDNTVASCL GADPELDEFM ETYCDILMKY 180
KADLSRPFDE ATAFLNDIEA QFNTLCNGAS RSQVHDEAVG SSDEDASGGD AEVQDCTRAN 240
EDRELKDKLL CKYSGYISTL KHEFSKKKKK GKLPKEAREV LLNWWTVHYK WPYPTEADKV 300
ALAESTGLEQ KQINNWFINQ RKRHWKPSEN MQFAVVDSLY GPFFMND*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
