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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G077700.1 | ||||||||
Common Name | POPTR_0015s08880g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 437aa MW: 49237.4 Da PI: 5.9226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 189 | 235 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd +l+++v+q G + W +a++++ gR +kqc++rw+++l Potri.015G077700.1 189 KGQWTTEEDRILIQLVEQNGVRKWCHVAQMLP-GRIGKQCRERWHNHL 235 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.6e-18 | 241 | 283 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+ eEd+ l++a+ +lG++ W+ Ia++++ gRt++++k++w+ Potri.015G077700.1 241 KDTWSVEEDKVLIQAHSELGNR-WAEIAKMLP-GRTENSIKNHWN 283 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.58 | 184 | 239 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.27E-31 | 187 | 282 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 188 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 189 | 235 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 190 | 241 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.11E-15 | 192 | 235 | No hit | No description |
PROSITE profile | PS51294 | 21.507 | 240 | 290 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-18 | 240 | 288 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 241 | 283 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 242 | 288 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.63E-14 | 243 | 286 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MFLSNKPYMK EDYFPFETVP ASPSSKGFLQ DFDHLDDDHD SQFHANGSAS NPFFGVQTGS 60 NFDSFDAFPY GLSSDIDFYD YECKPFVGNI NGGGGHGHGQ VNEDLQSGAY LNMSCDQRNP 120 IDDIGSNQGH VSLNFEEITP VSFVVPDEVS CVSAATNECK RKMGLNKTRA LLPPARKAWK 180 GPKKNSIVKG QWTTEEDRIL IQLVEQNGVR KWCHVAQMLP GRIGKQCRER WHNHLRPNIK 240 KDTWSVEEDK VLIQAHSELG NRWAEIAKML PGRTENSIKN HWNATKRKQY SKRKCRPKYP 300 RASLLQDYIK SLNLDSGITG RGLGITTAST DIILDNDTRM KAPELLPRDL VLFKDNDDGL 360 VPNYSFNEVP DYDIHEKIFR GGCSVDSILD GLPCDDSVAH EKRLEMDVPE PDVTPFMGFE 420 VKKEVDLLEM ISQSKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-45 | 187 | 289 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-45 | 187 | 289 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G077700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321603.2 | 0.0 | transcription factor MYB98 | ||||
TrEMBL | B9IES7 | 0.0 | B9IES7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s08880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-99 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G077700.1 |
Entrez Gene | 7457742 |