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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.015G069000.1 |
Common Name | POPTR_0015s08020g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB_related |
Protein Properties |
Length: 319aa MW: 35091.1 Da PI: 10.3692 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.015G069000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 38.3 | 3.2e-12 | 100 | 144 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ +++ + ++ G+g+W+ I+r + k+R + q+ s+ qk+
Potri.015G069000.1 100 PWTEEEHRRFLFGLQKVGKGDWRGISRNFVKTRNPTQVASHAQKH 144
8******************************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006338 | Biological Process | chromatin remodeling |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0035066 | Biological Process | positive regulation of histone acetylation |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003682 | Molecular Function | chromatin binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0003713 | Molecular Function | transcription coactivator activity |
GO:0004402 | Molecular Function | histone acetyltransferase activity |
Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MVTGSSSTVS GGEGAAETKP KEIRLFGVRV VVDNFRRNVS LNNVTEYQYY KEMTPNTNND 60 NNNEEEDAGA AVSGYMSADD TVHRSSPASG RRSERKRGVP WTEEEHRRFL FGLQKVGKGD 120 WRGISRNFVK TRNPTQVASH AQKHFLRLNN VNRRRRRTSL FDITADTLTS LPKEEQQAHR 180 QDSNINNHAS PSNPLPPPPL QANSITNFSG VPSIPIRTVN PSVLPLQIEN PMMESQSLGQ 240 GHQFINHSTN LVRPVAVVPA VCTPAMPDLN LNLKPTADSS SLSLKLSSPF VQRESTSRSS 300 AFQAMSSMKN GDNTITVA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF145942 | 1e-149 | EF145942.1 Populus trichocarpa clone WS0114_H05 unknown mRNA. |