PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G068100.2 | ||||||||
Common Name | POPTR_0015s07930g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26020.8 Da PI: 6.146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 9.9e-11 | 155 | 202 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq Potri.015G068100.2 155 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.13E-17 | 149 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.51E-8 | 149 | 206 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-18 | 151 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.643 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-8 | 155 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDPPLINETS FSAANPSSYT LTEIWPFPPP PPSSTRLGLR MDNLADPDGS LEESTLTDQS 60 SGNGTRIRKT RDFSSEKDDS SKMVSTTTSA NDLNDSNGKR RKISGSRSEN NDSRAETEAS 120 SAANNKTAEQ SSKPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MNMLQDLVPG 180 CNKVIGKALV LDEIINYIQS LQCQVEFLSM KLEAVNSRMN TSPTTEHLHP KDFCM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.18933 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G068100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441650.1 | 1e-174 | transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9LV17 | 1e-80 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A2K1XJ53 | 1e-173 | A0A2K1XJ53_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07930.1 | 1e-170 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 6e-80 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G068100.2 |
Entrez Gene | 7474855 |
Publications ? help Back to Top | |||
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